# HG changeset patch
# User p.lucas
# Date 1556798649 14400
# Node ID 6e4e5e8f06fe73c1dfe0524b69f510035cc08aaa
# Parent  836c7a8e563fb38ab1c6d67a8fc1676141abbbc7
Uploaded

diff -r 836c7a8e563f -r 6e4e5e8f06fe mafft.xml
--- a/mafft.xml	Thu May 02 07:57:29 2019 -0400
+++ b/mafft.xml	Thu May 02 08:04:09 2019 -0400
@@ -14,25 +14,15 @@
     </version_command>
     <command>
     <![CDATA[
-        mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment $outputFormat > $outputAlignment;
+        mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment > $outputAlignment;
     ]]>
     </command>
     <inputs>
         <param name="seqtoadd" type="data" format="fasta" label="Sequences to add" help="Sequences to add in FASTA format."/>
         <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/>
-        <param name="outputFormat" type="select" label="Output format" help="Either FASTA or ClustalW or Phylip">
-            <option value="" selected="true">FASTA</option>
-            <option value="--clustalout">ClustalW</option>
-            <option value="--phylipout">Phylip</option>
-        </param>
     </inputs>
     <outputs>
-        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}">
-            <change_format>
-                <when input="outputFormat" value="--clustalout" format="clustal"/>
-                <when input="outputFormat" value="--phylipout" format="phylip"/>
-            </change_format>
-        </data>
+        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}"/>
     </outputs>
     <help>
     <![CDATA[