Mercurial > repos > p.lucas > krona_with_conda

changeset 5:bc5e1613dd00 draft

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Uploaded tax option modify in command
author p.lucas
date Thu, 12 Jan 2023 08:59:53 +0000
parents 5581400c908e
children c65b7d48afc9
files krona.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/krona.xml	Thu Jan 12 08:58:47 2023 +0000
+++ b/krona.xml	Thu Jan 12 08:59:53 2023 +0000
@@ -7,13 +7,15 @@
 
 <command>
 	#if $type.program == 'galaxy':
-		ktImportGalaxy -tax /db/krona
+		ktImportGalaxy 
 	#else if $type.program == 'blast':
 		ktImportBLAST
+		-tax /db/krona
 		-e ${type.factor}
 		${type.random}
 	#else
 		ktImportTaxonomy
+	 	-tax /db/krona
 		${type.summary}
 	#end if
 	-o $output