Mercurial > repos > mvdbeek > test_sra

changeset 8:ba27f87d7c36 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 13:20:15 -0400
parents 5aca2a1c5f2e
children 9c04607bbb08
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Aug 14 13:06:29 2015 -0400
+++ b/tool_dependencies.xml	Fri Aug 14 13:20:15 2015 -0400
@@ -6,9 +6,15 @@
         <action type="make_directory">src</action>
         <action type="make_directory">build</action>
         <action type="change_directory">src</action>
+        <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
+        <action type="shell_command">
+            LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
+            ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
+            make
+            make install
+        </action>
         <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
         <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
-        <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
         <action type="change_directory">../src</action>
         <action type="shell_command">
             ls