Mercurial > repos > mvdbeek > test_sra

changeset 16:65412e4c5649 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 07:40:03 -0400
parents f382eaecfd34
children cf145d390fe3
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Aug 15 07:38:05 2015 -0400
+++ b/tool_dependencies.xml	Sat Aug 15 07:40:03 2015 -0400
@@ -3,7 +3,7 @@
   <package name="sra_toolkit" version="2.5.2">
     <install version="1.0">
       <actions>
-        <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz target_filename=ncbi-vdb-2.5.2.tar.gz</action>
+        <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz target_filename="ncbi-vdb-2.5.2.tar.gz"</action>
         <action type="shell_command">
             LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
@@ -11,14 +11,14 @@
             make install
             rm ../2.5.2.tar.gz
         </action>
-        <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz target_filename=ngs-1.1.3.tar.gz</action>
+        <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz target_filename="ngs-1.1.3.tar.gz"</action>
         <action type="shell_command">
             LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             make
             make install
         </action>
-        <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz target_filename=sra-tools-2.5.2.tar.gz</action>
+        <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz target_filename="sra-tools-2.5.2.tar.gz"</action>
         <action type="shell_command">
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             sed -i -e "109s/-static//" tools/copycat/Makefile