Mercurial > repos > mvdbeek > test_sra
annotate README.txt @ 18:fc784976527b draft default tip
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author | mvdbeek |
---|---|
date | Sat, 15 Aug 2015 07:44:28 -0400 |
parents | ec8b334b5ebb |
children |
rev | line source |
---|---|
0
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
1 The Galaxy tool wrappers contained in this tool shed repository rely on software developed by |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
2 the NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
3 Use of SRA Toolkit software herin should comply with the GPL v2 or greater. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
4 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
5 Copyright (C) 2013 Matthew Shirley |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
6 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
7 This program is free software: you can redistribute it and/or modify |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
8 it under the terms of the GNU General Public License as published by |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
9 the Free Software Foundation, either version 2 of the License, or |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
10 (at your option) any later version. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
11 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
12 This program is distributed in the hope that it will be useful, |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
13 but WITHOUT ANY WARRANTY; without even the implied warranty of |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
14 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
15 GNU General Public License for more details. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
16 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
17 You should have received a copy of the GNU General Public License |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
18 along with this program. If not, see <http://www.gnu.org/licenses/>. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
19 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
20 INSTALLATION |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
21 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
22 This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures. |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
23 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
24 Build Requirements: |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
25 ar |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
26 bash |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
27 make |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
28 gcc, g++ |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
29 libxml2 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
30 libcurl4 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
31 zlib |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
32 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
33 On a debian based Linux OS use: |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
34 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
35 apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
36 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
37 CONTROLLED-ACCESS DATA |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
38 |
ec8b334b5ebb
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff
changeset
|
39 Encrypted, controlled-access data is not supported in this version of the SRA Toolkit Galaxy tool shed. |