annotate README.txt @ 0:ec8b334b5ebb draft

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author mvdbeek
date Fri, 14 Aug 2015 12:23:28 -0400
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1 The Galaxy tool wrappers contained in this tool shed repository rely on software developed by
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2 the NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
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3 Use of SRA Toolkit software herin should comply with the GPL v2 or greater.
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4
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5 Copyright (C) 2013 Matthew Shirley
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6
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7 This program is free software: you can redistribute it and/or modify
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8 it under the terms of the GNU General Public License as published by
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9 the Free Software Foundation, either version 2 of the License, or
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10 (at your option) any later version.
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11
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12 This program is distributed in the hope that it will be useful,
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13 but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 GNU General Public License for more details.
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16
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17 You should have received a copy of the GNU General Public License
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18 along with this program. If not, see <http://www.gnu.org/licenses/>.
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19
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20 INSTALLATION
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21
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22 This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures.
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23
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24 Build Requirements:
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25 ar
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26 bash
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27 make
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28 gcc, g++
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29 libxml2
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30 libcurl4
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31 zlib
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32
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33 On a debian based Linux OS use:
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34
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35 apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev
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36
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37 CONTROLLED-ACCESS DATA
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38
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39 Encrypted, controlled-access data is not supported in this version of the SRA Toolkit Galaxy tool shed.