Mercurial > repos > mvdbeek > size_distribution

changeset 1:3ed18dcb6f82 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bardin-lab/smallRNA_tools commit a0c9f33672103cf29ad015477ebb898007ba9ae8
author mvdbeek
date Mon, 20 Aug 2018 13:00:14 -0400
parents ac5584567084
children c8c7b6113241
files alignment_size_distribution.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/alignment_size_distribution.xml	Mon Aug 20 12:39:15 2018 -0400
+++ b/alignment_size_distribution.xml	Mon Aug 20 13:00:14 2018 -0400
@@ -5,7 +5,7 @@
         <requirement type="package" version="0.15">pysam</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python '/size_distributions.py' '$alignment_file' --minimum_size $minimum_size --maximum_size $maximum_size $wide --output '$distribution'
+python '$__tool_directory__/size_distributions.py' '$alignment_file' --minimum_size $minimum_size --maximum_size $maximum_size $wide --output '$distribution'
     ]]></command>
     <inputs>
         <param name="alignment_file" type="data" format="bam,unsorted.bam"/>