# HG changeset patch
# User mvdbeek
# Date 1534784414 14400
# Node ID 3ed18dcb6f829b6e7b990474c3e8db03ef931ab2
# Parent  ac558456708491296e625c684c6f74d71982ede4
planemo upload for repository https://github.com/bardin-lab/smallRNA_tools commit a0c9f33672103cf29ad015477ebb898007ba9ae8

diff -r ac5584567084 -r 3ed18dcb6f82 alignment_size_distribution.xml
--- a/alignment_size_distribution.xml	Mon Aug 20 12:39:15 2018 -0400
+++ b/alignment_size_distribution.xml	Mon Aug 20 13:00:14 2018 -0400
@@ -5,7 +5,7 @@
         <requirement type="package" version="0.15">pysam</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python '/size_distributions.py' '$alignment_file' --minimum_size $minimum_size --maximum_size $maximum_size $wide --output '$distribution'
+python '$__tool_directory__/size_distributions.py' '$alignment_file' --minimum_size $minimum_size --maximum_size $maximum_size $wide --output '$distribution'
     ]]></command>
     <inputs>
         <param name="alignment_file" type="data" format="bam,unsorted.bam"/>