Mercurial > repos > mvdbeek > simple_deseq
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/deseq1_no_replicate commit f95b47ed1a09ce14d3b565e8ea56d8bf12c35814-dirty
| author | mvdbeek |
|---|---|
| date | Sat, 05 Mar 2016 07:00:59 -0500 |
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id baseMean baseMeanA baseMeanB foldChange log2FoldChange pval padj NM_175296 550.257081641789 23.0570665650267 1077.45709671855 46.7300163132137 5.54627763572775 2.94263028018847e-05 0.00644436031361274 NM_008922 2761.88390328638 3439.89474039184 2083.87306618093 0.605795590694022 -0.723097017425946 0.347606050966418 1 NM_175370 5.38365399113096 4.39182220286222 6.37548577939971 1.45167210440457 0.537715622224322 0.990005634217648 1 NM_175642 997.663221848256 1072.7025730491 922.623870647415 0.86009290350158 -0.217435593000529 0.813633092837835 1 NM_199021 836.203305648638 364.521242837565 1307.88536845971 3.58795377267635 1.84316130264284 0.0626078198560322 1 NM_001113391 50.5050597737388 20.8611554635956 80.148964083882 3.8420194041384 1.94186480536043 0.588949394940853 1 NM_177834 1.45976145812916 1.09795555071556 1.82156736554277 1.65905383360522 0.730360700166718 1 1 NM_145381 499.809337655363 665.361063733627 334.257611577099 0.50237026149597 -0.99317703046302 0.380302644068079 1 NM_001160370 5.1964821231868 2.19591110143111 8.19705314494248 3.73287112561174 1.90028570160903 0.944125764419882 1 NM_027974 2.73235104831416 0 5.46470209662832 Inf Inf 0.938358360314402 1 NM_133235 40.6243553764756 81.2487107529511 0 0 -Inf 0.145102891498674 1 NM_028096 43.1820723853203 84.5425774050978 1.82156736554277 0.0215461536831847 -5.53642584052818 0.233702615387616 1 NM_201365 0.548977775357778 1.09795555071556 0 0 -Inf 0.998927694411559 1 NM_001081198 82.594736195631 34.0366220721822 131.15285031908 3.85328632321212 1.94608939122216 0.462688157520551 1 NM_001160386 1046.90061760728 977.180440136845 1116.62079507772 1.14269662921348 0.19244243800374 0.833336518172557 1 NM_009418 602.807150795673 500.667731126293 704.946570465053 1.4080127929939 0.493660442146387 0.641852666271462 1 NM_001114663 363.32611911617 405.14559821404 321.506640018299 0.793558270003581 -0.333591932622498 0.792593951488735 1 NM_001252070 400.792732835367 379.892620547582 421.692845123152 1.11003168346708 0.15060085579023 0.903502845938378 1 NM_001081050 66.9936475567726 102.109866216547 31.8774288969985 0.312187549334316 -1.67951509399635 0.572465876059971 1 NM_175210 316.769131973206 318.407109707511 315.1311542389 0.989711424874838 -0.0149201622114915 0.993523569111412 1 NM_010154 27.4923233879621 34.0366220721822 20.9480247037419 0.615455454401936 -0.700273654163144 0.901208579832052 1 NM_010472 904.161918218376 290.958220939622 1517.36561549713 5.21506355997414 2.3826848360817 0.0158991056306887 1 NM_023314 9.10783682771387 0 18.2156736554277 Inf Inf 0.721533818353331 1 NM_030184 7.75419913203152 5.48977775357778 10.0186205104853 1.82495921696574 0.867864223916653 0.964185247511447 1 NM_011066 27.4238131109394 43.9182220286222 10.9294041932566 0.248858075040783 -2.00660489399949 0.716550794858647 1 NM_145519 81.322146605446 35.1345776228978 127.509715587994 3.62918026101142 1.85964371711168 0.485782435977372 1 NM_173760 7561.91765120431 8833.05240550665 6290.78289690197 0.712186751318288 -0.489672497132453 0.488183522988289 1 NM_019933 93.2133813545497 137.244443839445 49.1823188696549 0.358355628058728 -1.4805360823319 0.544005134216514 1 NM_181750 1546.77174884584 1589.83963743613 1503.70386025556 0.945821090912368 -0.0803607820032293 0.924087658358129 1 NM_028320 57.1304065634563 50.5059553329156 63.7548577939971 1.26232356904745 0.336081761054672 0.922196771138821 1 NM_021605 865.859300007668 867.384885065289 864.333714950046 0.996482334235034 -0.00508386587663763 0.996927671546069 1 NM_173437 1223.22950281875 1416.36266042307 1030.09634521444 0.727282901475777 -0.459411436154078 0.601242849897484 1 NM_001287179 2446.11287201569 2561.53029981939 2330.69544421198 0.909884003471015 -0.136245459778035 0.861333416986089 1 NM_001081290 2571.0621839173 3434.40496263826 1707.71940519635 0.497238800832767 -1.00798921687003 0.196422976021522 1 NM_013862 150.841718820288 86.7384885065289 214.944949134047 2.47808040968881 1.30922300135146 0.487587424343186 1 NM_023041 1.45976145812916 1.09795555071556 1.82156736554277 1.65905383360522 0.730360700166718 1 1 NM_022563 449.1780040377 509.451375532018 388.904632543382 0.763379296281712 -0.389528035340363 0.739321056761357 1 NM_026626 17.0183110360911 34.0366220721822 0 0 -Inf 0.481303356241443 1 NM_027188 299.632159346193 272.292976577458 326.971342114928 1.20080710940378 0.264004423602895 0.848397471729768 1 NM_001243792 0.455391841385693 0 0.910783682771387 Inf Inf 1 1 NM_133684 2694.50829974072 3210.42203029229 2178.59456918916 0.678600678861779 -0.559365221587614 0.468011574784408 1 NM_001011874 61.0610157902839 96.6200884629689 25.5019431175988 0.263940382619012 -1.92171599641297 0.544143317827527 1 NM_001159751 1.64693332607333 3.29386665214667 0 0 -Inf 0.969328566374626 1 NM_001195662 0.455391841385693 0 0.910783682771387 Inf Inf 1 1 NM_133826 2492.57448210632 2486.86932237073 2498.27964184191 1.00458822639716 0.00660427208139822 0.994002240320103 1 NR_015470 132.856651652878 68.0732441443645 197.640059161391 2.90334420880914 1.53771562222432 0.446753646001205 1 NM_145692 3.83030659902972 2.19591110143111 5.46470209662832 2.48858075040783 1.31532320088787 0.975646222757189 1 NM_026493 24.8660961020947 40.6243553764756 9.10783682771387 0.224196464000705 -2.15716457057487 0.718121897123029 1 NM_001033636 11.0480657841782 12.0775110578711 10.0186205104853 0.82952691680261 -0.269639299833282 0.989702831253409 1 NM_001081209 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NM_172841 298.563309468722 83.4446218543822 513.681997083062 6.15596290890358 2.62198453912193 0.0686443521263218 1 NM_008678 1.55334739210125 2.19591110143111 0.910783682771387 0.414763458401305 -1.26963929983328 0.996842691060285 1 NM_010164 11.1416517181503 13.1754666085867 9.10783682771387 0.691272430668842 -0.532673705667075 0.970044414882285 1 NM_001098528 59.0831733483954 68.0732441443645 50.0931025524263 0.735870652002315 -0.442475896695497 0.892597440035583 1 NM_025303 4.92826214974527 4.39182220286222 5.46470209662832 1.24429037520391 0.315323200887874 0.999467966583585 1 NM_133832 6248.34055639666 8055.69987560003 4440.98123719328 0.551284345962863 -0.859131459034952 0.231104447343071 1 NM_001033288 11.8778013614522 16.4693332607333 7.28626946217109 0.442414355628059 -1.1765298954418 0.918386310445452 1 NM_026456 2308.54826577055 2106.97670182315 2510.11982971794 1.19133724997811 0.252581876675629 0.748161621366247 1 NM_020604 31.509801854936 38.4284442750445 24.5911594348274 0.639920764390585 -0.64403481461478 0.899195857270663 1 NR_130314 4.29823626889014 7.68568885500889 0.910783682771387 0.118503845257516 -3.07699422189089 0.925849280963547 1 NM_153154 12.5888753478047 8.78364440572445 16.394106289885 1.86643556280587 0.90028570160903 0.936468712839545 1 NM_153179 75.6702726408735 32.9386665214667 118.40187876028 3.59461663947798 1.84583791758665 0.507141510555957 1 NM_028534 21.6407397269707 24.1550221157422 19.1264573381991 0.791821147857037 -0.336753495691819 0.965344996612208 1 NM_007733 188.446248652707 121.873066129427 255.019431175988 2.09250033067325 1.06522785076158 0.527555854289047 1 NM_026719 857.710159278682 1247.27750561287 468.142812944493 0.375331721158927 -1.41376187014409 0.145435608652991 1 NM_177235 42.7325016785836 47.2120886807689 38.2529146763982 0.810235593156038 -0.303586631756619 0.943492401847165 1 NM_001276764 16.5938159863039 7.68568885500889 25.5019431175988 3.31810766721044 1.73036070016672 0.836455900504547 1 NM_183019 5.85158366099139 9.88159995644 1.82156736554277 0.184339314845024 -2.43956430127559 0.915329542181566 1 NM_001277076 37.5543785185205 13.1754666085867 61.9332904284543 4.70065252854812 2.2328610406959 0.614311251682979 1 NM_198006 910.737561473783 897.029684934609 924.445438012958 1.03056281585636 0.0434324440935736 0.964636684440604 1 NM_018872 2780.43720275145 3507.9679845362 2052.90642096671 0.5852124164235 -0.772967715495418 0.315303257683372 1 NM_001290814 159.424757970417 16.4693332607333 302.3801826801 18.3601957585644 4.19850953590512 0.0404434507197186 1 NM_019570 699.448284899296 902.519462688187 496.377107110406 0.549990474035794 -0.862521463850676 0.396091200072093 1 NM_001290720 1.09795555071556 2.19591110143111 0 0 -Inf 0.985480439249778 1 NR_110976 33.4124173259761 34.0366220721822 32.7882125797699 0.963321580803031 -0.0539106087778448 0.997994666847934 1 NM_008719 476.78988457576 635.716263864307 317.863505287214 0.500008452442333 -0.999975611612866 0.384776777762049 1 NM_018775 9570.27000312689 9902.4611119036 9238.07889435018 0.93290736413448 -0.100194263476923 0.885707723547546 1 NM_145142 53.5065263546713 98.8159995644 8.19705314494248 0.082952691680261 -3.59156739472064 0.324912076725441 1 NM_001252201 0.548977775357778 1.09795555071556 0 0 -Inf 0.998927694411559 1 NM_001033289 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NR_027826 5.92009393801401 0 11.840187876028 Inf Inf 0.828850950249326 1 NM_001013025 2059.45116743051 1749.04319228988 2369.85914257115 1.35494603736371 0.438235395359204 0.583753117614165 1 NM_023645 1544.10835585414 2178.34381261966 909.872899088615 0.417690216676314 -1.25949474242774 0.1379374268317 1 NM_028450 145.384628976662 209.709510186671 81.0597477666534 0.386533484792839 -1.37133469690263 0.475076254437332 1 NM_028599 2480.05008701925 2665.83607713737 2294.26409690112 0.860617093667947 -0.216556599354723 0.780713389401384 1 NM_019790 67.03036548302 38.4284442750445 95.6322866909956 2.48858075040783 1.31532320088787 0.657614416850309 1 NM_153556 500.806095019104 543.4879976042 458.124192434008 0.842933412427703 -0.246509424994727 0.827340715676919 1 NM_030025 37.8602119773862 27.4488887678889 48.2715351868835 1.75859706362153 0.814424964955193 0.852888644487967 1 NM_001001883 109.762867161604 85.6405329558134 133.885201367394 1.56333918935876 0.644630826140834 0.772082201667406 1 NM_001081433 16889.2605109395 15057.3624225131 18721.1585993659 1.24332257363845 0.314200644752154 0.646691137197094 1 NM_031179 25279.9201165112 31476.1897279136 19083.6505051089 0.606288457086825 -0.721923739151707 0.28987339268375 1 NM_139146 279.408642016455 350.247820678262 208.569463354648 0.595491109554225 -0.747848125501207 0.595247425178523 1 NM_199007 90.0381762933246 142.734221593022 37.3421309936269 0.261620027606977 -1.93445510824365 0.441663829793339 1 NM_025824 1603.1118244358 1812.72461423138 1393.49903464022 0.768731788436095 -0.379447767166526 0.648712845379179 1 NM_172513 5979.50175156399 5115.37491078377 6843.6285923442 1.33785474411994 0.419921485700032 0.557641043192325 1 NM_001013771 71.0670984722944 91.1303107093911 51.0038862351977 0.559680811336701 -0.837323809122602 0.76914778639929 1 NM_001033373 447.501069479205 612.65919729928 282.34294165913 0.460848287112561 -1.11763620638823 0.343028234212318 1 NM_172406 162.50637709767 9.88159995644 315.1311542389 31.8907014681892 4.99506392636113 0.0183375670652751 1 NM_175200 27.2366412429953 41.7223109271911 12.7509715587994 0.305615179874646 -1.71021189121926 0.757390297897438 1 NM_001045513 576.581595863247 502.863642227725 650.29954949877 1.29319261702416 0.370937176098874 0.730644083724698 1 NM_173444 429.546003544216 487.492264517707 371.599742570726 0.762267977602398 -0.391629824211892 0.742008925176287 1 NM_007561 3448.34434122463 3800.02416102654 3096.66452142271 0.814906534853763 -0.295293494973665 0.693107941370785 1 NM_030013 254.402838682785 88.93439960796 419.871277757609 4.72113467464201 2.23913363771143 0.140140550578586 1 NM_001037725 6935.43549801164 7696.66841051605 6174.20258550723 0.802191579030655 -0.317981273280539 0.653703103745023 1 NR_045915 21.721787832468 19.76319991288 23.6803757520561 1.19820554649266 0.260875416865498 0.975387453897451 1 NR_045914 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NM_011780 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NM_001097644 6047.88709808146 9176.71249288062 2919.06170328229 0.318094492504471 -1.65247270164959 0.023955465230789 1 NM_001039493 1584.66464873318 1751.23910339131 1418.09019407505 0.809763893079413 -0.304426779406476 0.715314432267999 1 NM_033563 3664.44142723958 4743.1679790912 2585.71487538797 0.545145119630234 -0.875287763159721 0.24204136502861 1 NM_011086 956.529293300201 1167.12675041064 745.931836189766 0.639118104291004 -0.645845539723378 0.488233772799794 1 NM_175510 110.468120013307 115.285332825133 105.650907201481 0.916429736658122 -0.125903822371832 0.958099541932628 1 NM_177645 4.37928437438749 3.29386665214667 5.46470209662832 1.65905383360522 0.730360700166718 0.987881556521901 1 NM_001080809 335.04659921183 265.705243273165 404.387955150496 1.52194194653041 0.60591332924223 0.643343889625955 1 NM_011770 194.916215925256 203.121776882378 186.710654968134 0.919205502402892 -0.121540660844148 0.943896949809068 1 NM_177164 102.988857548543 150.419910448031 55.5578046490546 0.369351400912111 -1.43693404523092 0.533197887582543 1 NM_001005423 121.316476101066 119.677155027996 122.955797174137 1.02739572264543 0.0389919724406226 0.989815266224581 1 NM_008342 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NM_001045533 730.381346644395 688.418130298654 772.344562990136 1.12191200231039 0.165959521927878 0.869336033319467 1 NM_176980 3.18774288969985 0 6.37548577939971 Inf Inf 0.9232241431056 1 NM_029342 347.85846879465 132.852621636582 562.864315952717 4.23675731061168 2.0829604907965 0.116955759101528 1 NM_001014974 440.828705832707 283.272532084613 598.384879580801 2.11239993929967 1.07888300506579 0.362707070927545 1 NM_176972 5103.07888328677 5165.88086611669 5040.27690045685 0.975685857085153 -0.0355113788392261 0.960907279080087 1 NM_007936 5300.34728538981 6518.56210459826 4082.13246618136 0.626232043306265 -0.675230764091557 0.350590067361872 1 NM_001004173 102.745713232051 163.595377056618 41.8960494074838 0.256095558207517 -1.96524586423843 0.400538793267848 1 NM_009255 19017.4874886885 25664.7109979761 12370.263979401 0.48199506241767 -1.05290972739899 0.126811774519035 1 NM_172849 116.318808115122 45.0161775793378 187.621438650906 4.1678669478375 2.05930922273185 0.348601468393209 1 NM_007734 185.708076469744 159.203554853756 212.212598085733 1.33296394217247 0.414637754806064 0.807704978825521 1 NM_172430 7.74166130355679 0 15.4833226071136 Inf Inf 0.766603402480197 1 NM_133975 29071.1319752384 24211.0178488287 33931.246101648 1.40147953768451 0.486950680441342 0.473325855239291 1 NM_152915 55.621389350605 107.599643970124 3.64313473108555 0.0338582415021473 -4.88434914394849 0.197912230188399 1 NM_001003948 2851.41698420401 3042.43483103281 2660.39913737522 0.874430936117078 -0.19358365248552 0.800049650744032 1 NM_001081746 14.3419324363249 18.6652443621645 10.0186205104853 0.536752710872277 -0.897670522446324 0.92722677123194 1 NM_013673 48.3467621577319 32.9386665214667 63.7548577939971 1.93556280587276 0.952753121503166 0.795411398926133 1 NM_008801 646.104302535208 276.68479878032 1015.5238062901 3.67032742950361 1.87590877147447 0.0784737031566523 1 NM_019867 0.910783682771387 0 1.82156736554277 Inf Inf 0.991787014360587 1 NM_001111314 10.4740123518709 0 20.9480247037419 Inf Inf 0.678230234492357 1 NM_177646 1888.70519812701 1840.17350299927 1937.23689325474 1.05274686875844 0.0741585844280388 0.927788895610149 1 NM_029122 8082.81248189705 7843.79445431193 8321.83050948216 1.06094449031711 0.0853491749716097 0.903668395681882 1 NM_178119 6.10726580595818 2.19591110143111 10.0186205104853 4.56239804241436 2.18979231880402 0.922184798209822 1 NM_001033408 157.309894974483 7.68568885500889 306.934101093957 39.9357958517828 5.31961055929097 0.0151975843653781 1 NM_207225 301.679407624281 371.108976141858 232.249839106704 0.625826520072975 -0.676165299256608 0.619862448691299 1 NM_207031 0.455391841385693 0 0.910783682771387 Inf Inf 1 1 NM_172463 25.4025360489778 36.2325331736133 14.5725389243422 0.402194868752781 -1.31403341919174 0.822271293120963 1 NM_174874 392.406716704127 217.39519904168 567.418234366574 2.61007711701023 1.38409243311111 0.265951386810926 1 NR_120500 29.1450778486844 0 58.2901556973687 Inf Inf 0.276435574699721 1 NM_013626 9.1203746561886 5.48977775357778 12.7509715587994 2.32267536704731 1.21578752733696 0.936093704246766 1 NM_011800 383.975922614048 513.84319773488 254.108647493217 0.494525661940017 -1.0158827075875 0.414210406180442 1 NM_013784 1072.16120752674 1150.6574171499 993.664997903583 0.863562849457679 -0.211626915047125 0.815420875216619 1 NM_009741 17.9474536819862 2.19591110143111 33.6989962625413 15.3462479608483 3.93981406579567 0.637695048293193 1 NM_133821 68.1851890414603 105.403732868693 30.9666452142271 0.293790783034258 -1.7671389593041 0.54902312060599 1 NM_172853 14.1171470829565 0 28.234294165913 Inf Inf 0.572470620711446 1 NM_001081386 169.077542557193 215.199287940249 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