Mercurial > repos > mvdbeek > repeat_element_identifier

comparison repeat_element_identifier_tool.xml @ 2:862f0f5bfab7 draft

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planemo upload for repository https://github.com/artbio/tools-artbio commit 3d96056b65a38e7642cfeef4ed274dc76b88472a-dirty
author mvdbeek
date Wed, 11 May 2016 13:23:48 -0400
parents b6eba97ffa0e
children 9b5d67bce66a
comparison
equal deleted inserted replaced
1:b6eba97ffa0e 2:862f0f5bfab7
1 <tool id="repeat_element_identifier" name="repeat_element_identifier" version="0.0.1" hidden="false" > 1 <tool id="repeat_element_identifier" name="repeat_element_identifier" version="0.0.1" hidden="false" >
2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
3 <requirements>
4 </requirements>
5 <command>> 2 <command>>
6 #for i in $rep 3 #for i in $rep
7 echo "$i.input_file.element_identifier" > "$output" 4 echo "$i.input_file.element_identifier" > "$output"
8 #end for 5 #end for
9 </command> 6 </command>
10 <inputs> 7 <inputs>
11 <repeat name="rep" title="input"> 8 <repeat name="rep" title="input">
12 <param name="input_file" type="data" format="bam,sam" label="Alignment file" help="The input alignment file(s) for which to analyze the mismatches."/> 9 <param name="input_file" type="data"/>
13 </repeat> 10 </repeat>
14 </inputs> 11 </inputs>
15 <outputs> 12 <outputs>
16 <data name="output" /> 13 <data name="output" />
17 </outputs> 14 </outputs>
18 <tests>
19 </tests>
20 <help> 15 <help>
21 This tool will print the element identifier of files in a repeat section. 16 This tool will print the element identifier of files in a repeat section.
22 </help> 17 </help>
23 <citations>
24 </citations>
25 </tool> 18 </tool>