Mercurial > repos > mvdbeek > planemo_0_24_2_test

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
author mvdbeek
date Mon, 25 Apr 2016 09:20:55 -0400
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a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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1 This tool clips adapter sequences from a fastq file and outputs either a
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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2 fasta or fastq file of clipped reads with renumbered fasta/fastq headers.
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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4 Clipped sequences with Ns can be discarded.
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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6 Min size and max size filter clipped reads on their size.
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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8 Note that unclipped reads that satisfy the min and max size conditions are kept.
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
parents:
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a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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10 Homepage: drosophile.org
a5fee116b75b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 70312b58ba246c07e70cdbd0a097f274f1386d09-dirty
mvdbeek
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11 Repositoy development: https://bitbucket.org/drosofff/gedtools/