Mercurial > repos > mvdbeek > package_r_3_2_1_goseq_1_22_0
changeset 0:68d3b170ac8a draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
| author | mvdbeek |
|---|---|
| date | Tue, 23 Feb 2016 12:54:45 -0500 |
| parents | |
| children | 1aa66c711a76 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 42 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Feb 23 12:54:45 2016 -0500 @@ -0,0 +1,42 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.2.1"> + <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="libxml2" version="2.9.1"> + <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="goseq" version="1.22.0"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="R" version="3.2.1" /> + </repository> + <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 --> + <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="libxml2" version="2.9.1" /> + </repository> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiasedUrn_1.07.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiocGenerics_0.16.1.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/S4Vectors_0.8.11.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/IRanges_2.4.7.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomeInfoDb_1.6.3.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Biobase_2.30.0.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/DBI_0.3.1.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/RSQLite_1.0.0.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/AnnotationDbi_1.32.3.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/geneLenDataBase_1.6.0.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GO.db_3.2.2.tar.gz?raw=true</package> + <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/goseq_1.22.0.tar.gz?raw=true</package> + </action> + </actions> + </install> + <readme> + goseq Gene Ontology analyser + ----- + Does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data. + By default, tests gene ontology (GO) categories, but any categories may be tested. + </readme> + </package> +</tool_dependency>