Mercurial > repos > mvdbeek > package_ngs_sdk_1_1_3

changeset 3:a00c9a1db096 draft default tip

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planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 13:18:15 -0400
parents c9b972613908
children
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 25 12:25:49 2015 -0400
+++ b/tool_dependencies.xml	Fri Sep 25 13:18:15 2015 -0400
@@ -6,9 +6,12 @@
     <package name="ngs_sdk" version="1.1.3">
         <install version="1.0">
             <actions>
-                <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
+                <action target_filename="ngs-1.1.3.tar.gz" type="download_file">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
+                <action type="shell_command">
+                    tar -xf ngs-1.1.3.tar.gz
+                </action>
+                <action type="change_directory">ngs-1.1.3/ngs-sdk</action>
                 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
-                <action type="change_directory">ngs-sdk</action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="set_to" name="NGS_SDK_DIR">$INSTALL_DIR</environment_variable>