view tool_dependencies.xml @ 3:a00c9a1db096 draft default tip

planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 13:18:15 -0400
parents c9b972613908
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ngs_sdk" version="1.1.3">
        <install version="1.0">
            <actions>
                <action target_filename="ngs-1.1.3.tar.gz" type="download_file">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
                <action type="shell_command">
                    tar -xf ngs-1.1.3.tar.gz
                </action>
                <action type="change_directory">ngs-1.1.3/ngs-sdk</action>
                <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="NGS_SDK_DIR">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            ncbi-ngs-sdk, required for sra-tools package.

        </readme>
    </package>
</tool_dependency>