Mercurial > repos > mvdbeek > package_ngs_sdk_1_1_3

changeset 0:f530f97e76ea draft

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planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 09:26:15 -0400
parents
children b0e9867f0dfb
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Sep 25 09:26:15 2015 -0400
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ngs_sdk" version="1.1.3">
+        <install version="1.0">
+            <actions>
+                <action target_filename="ngs-1.1.3.tar.gz" type="download_file">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
+                <action type="shell_command">
+                    tar -xf ngs-1.1.3.tar.gz
+                </action>
+                <action type="change_directory">ngs-1.1.3/ngs-sdk</action>
+                <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="NGS_SDK_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            ncbi-ngs-sdk, required for sra-tools package.
+
+        </readme>
+    </package>
+</tool_dependency>