Mercurial > repos > mvdbeek > package_ngs_1_1_3

changeset 3:33b3938a8c2a draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 09:53:56 -0400
parents ec5356060e00
children 35f562227199
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Aug 15 09:49:44 2015 -0400
+++ b/tool_dependencies.xml	Sat Aug 15 09:53:56 2015 -0400
@@ -4,20 +4,21 @@
         <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
     </package>
 -->
+    <package name="ngs" version="1.1.3">
+        <install version="1.0">
+            <actions>
 <action type="setup_perl_environment">
-    <repository name="package_perl_5_18" owner="bgruening"><package name="perl" version="5.18.1" />
+    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+        <package name="perl" version="5.18.1" />
     </repository>
     <package>File::Copy</package>
     <package>File::Spec</package>
     <package>File::Copy::Recursive</package>
 </action>
-    <package name="ngs" version="1.1.3">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url" target_filename="ngs-1.1.3.tar.gz">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
+                <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
                 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>