Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2

comparison tool_dependencies.xml @ 4:9e86738381d1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 13:18:33 -0400
parents a20af718e248
children
comparison
equal deleted inserted replaced
3:a20af718e248 4:9e86738381d1
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="ngs_sdk" version="1.1.3"> 3 <package name="ngs_sdk" version="1.1.3">
4 <repository changeset_revision="c9b972613908" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="ncbi_vdb" version="2.5.2"> 6 <package name="ncbi_vdb" version="2.5.2">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="set_environment_for_install"> 9 <action type="set_environment_for_install">
11 <repository changeset_revision="c9b972613908" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu"> 10 <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="ngs_sdk" version="1.1.3" /> 11 <package name="ngs_sdk" version="1.1.3" />
13 </repository> 12 </repository>
14 </action> 13 </action>
14 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_file">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
15 <action type="shell_command">
16 tar -xf ncbi-vdb-2.5.2.tar.gz
17 </action>
18 <action type="change_directory">ncbi-vdb-2.5.2</action>
15 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> 19 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
16 <action type="move_directory_files"> 20 <action type="move_directory_files">
17 <source_directory>.</source_directory> 21 <source_directory>.</source_directory>
18 <destination_directory>$INSTALL_DIR/</destination_directory> 22 <destination_directory>$INSTALL_DIR/</destination_directory>
19 </action> 23 </action>