Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2

changeset 4:9e86738381d1 draft default tip

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planemo upload commit 92d32947393757598262fbaed175b2c6fd84c181
author mvdbeek
date Fri, 25 Sep 2015 13:18:33 -0400
parents a20af718e248
children
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 25 12:26:45 2015 -0400
+++ b/tool_dependencies.xml	Fri Sep 25 13:18:33 2015 -0400
@@ -1,17 +1,21 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="ngs_sdk" version="1.1.3">
-        <repository changeset_revision="c9b972613908" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="ncbi_vdb" version="2.5.2">
         <install version="1.0">
             <actions>
-                <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="c9b972613908" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="a00c9a1db096" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="ngs_sdk" version="1.1.3" />
                     </repository>
                 </action>
+                <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_file">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
+                <action type="shell_command">
+                    tar -xf ncbi-vdb-2.5.2.tar.gz
+                    </action>
+                <action type="change_directory">ncbi-vdb-2.5.2</action>
                 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>