Mercurial > repos > mvdbeek > package_mirdeep2

changeset 0:6fbc70531479 draft default tip

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Mon, 17 Aug 2015 13:59:44 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 35 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 17 13:59:44 2015 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bowtie" version="1.0.0">
+        <repository changeset_revision="0931da782b5d" name="package_bowtie_1_0_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="vienna_rna" version="1.8.5">
+        <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="squid" version="1.9g">
+        <repository changeset_revision="8ebcef4aedfb" name="package_squid_1_9g" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="randfold" version="2.0">
+        <repository changeset_revision="3ff0bc80c628" name="package_randfold_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mirdeep2" version="0.0.7">
+        <install version="1.0">
+            <actions>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <package>Compress::Zlib</package>
+                    <package>PDF::API2</package>
+                </action>
+                <action type="download_by_url">https://www.mdc-berlin.de/43969303/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_7.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>mirdeep2_0_0_7</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>