Mercurial > repos > mvdbeek > igv_take_screenshots

diff igv_make_screenshots.xml @ 32:9382c8499e73 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c6f25b122899a00695b5ca9e70d34e2c1d288236-dirty
author mvdbeek
date Sun, 20 Jan 2019 14:30:27 -0500
parents 474837e086cc
children 3f980046df62
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--- a/igv_make_screenshots.xml	Sun Jan 20 13:30:21 2019 -0500
+++ b/igv_make_screenshots.xml	Sun Jan 20 14:30:27 2019 -0500
@@ -51,7 +51,7 @@
 cat load_session.txt '$script_file' '$exit_session' > igv_script.txt &&
 cp '$igv_session_remote' '$igv_session_out'
 #if not $skip_screenshots:
-    && python $__tool_directory__/xvfb_igv.py igv_script.txt '$igv_preferences' $width,$height &&
+    && xvfb-run --server-args="-screen 0 ${width}x${height}x24" igv -g genome.fa -o '$igv_preferences' --batch igv_script.txt &&
     mkdir screenshots && mv *.png screenshots
 #end if
     ]]></command>