Mercurial > repos > mvdbeek > igv_take_screenshots

comparison igv_make_screenshots.xml @ 32:9382c8499e73 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c6f25b122899a00695b5ca9e70d34e2c1d288236-dirty
author mvdbeek
date Sun, 20 Jan 2019 14:30:27 -0500
parents 474837e086cc
children 3f980046df62
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31:474837e086cc 32:9382c8499e73
49 cat '$load_session' > load_session.txt && 49 cat '$load_session' > load_session.txt &&
50 echo snapshotDirectory "\$PWD" >> load_session.txt && 50 echo snapshotDirectory "\$PWD" >> load_session.txt &&
51 cat load_session.txt '$script_file' '$exit_session' > igv_script.txt && 51 cat load_session.txt '$script_file' '$exit_session' > igv_script.txt &&
52 cp '$igv_session_remote' '$igv_session_out' 52 cp '$igv_session_remote' '$igv_session_out'
53 #if not $skip_screenshots: 53 #if not $skip_screenshots:
54 && python $__tool_directory__/xvfb_igv.py igv_script.txt '$igv_preferences' $width,$height && 54 && xvfb-run --server-args="-screen 0 ${width}x${height}x24" igv -g genome.fa -o '$igv_preferences' --batch igv_script.txt &&
55 mkdir screenshots && mv *.png screenshots 55 mkdir screenshots && mv *.png screenshots
56 #end if 56 #end if
57 ]]></command> 57 ]]></command>
58 <configfiles> 58 <configfiles>
59 <configfile name="igv_session"><![CDATA[<?xml version="1.0" encoding="UTF-8" standalone="no"?> 59 <configfile name="igv_session"><![CDATA[<?xml version="1.0" encoding="UTF-8" standalone="no"?>