Mercurial > repos > mvdbeek > igv_take_screenshots

diff xvfb_igv.py @ 11:64eb1ffd7872 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
author: mvdbeek
date: Mon, 03 Jul 2017 12:10:06 -0400
parents: d828cf6bff42
children: 1100d5a77c4d
--- a/xvfb_igv.py	Mon Jul 03 11:42:19 2017 -0400
+++ b/xvfb_igv.py	Mon Jul 03 12:10:06 2017 -0400
@@ -5,13 +5,13 @@
 import xvfbwrapper
 
 
-def take_screenshots(igv_script, screensize):
+def take_screenshots(igv_script, preferences_file, screensize):
     width, height = screensize.split(',')
     with xvfbwrapper.Xvfb(width=width, height=height) as xvfb:
-        exit_code = subprocess.call(['igv', '--batch', igv_script], env=os.environ.copy())
+        exit_code = subprocess.call(['igv', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy())
     sys.exit(exit_code)
 
 
 if __name__ == '__main__':
-    take_screenshots(sys.argv[1], sys.argv[2])
+    take_screenshots(sys.argv[1], sys.argv[2], sys.argv[3])