Mercurial > repos > mvdbeek > igv_take_screenshots

comparison xvfb_igv.py @ 11:64eb1ffd7872 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 4824aeaa8107bd30ec786e8ca81779f053f0e736-dirty
author mvdbeek
date Mon, 03 Jul 2017 12:10:06 -0400
parents d828cf6bff42
children 1100d5a77c4d
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10:afb3f4c224d4 11:64eb1ffd7872
3 import sys 3 import sys
4 4
5 import xvfbwrapper 5 import xvfbwrapper
6 6
7 7
8 def take_screenshots(igv_script, screensize): 8 def take_screenshots(igv_script, preferences_file, screensize):
9 width, height = screensize.split(',') 9 width, height = screensize.split(',')
10 with xvfbwrapper.Xvfb(width=width, height=height) as xvfb: 10 with xvfbwrapper.Xvfb(width=width, height=height) as xvfb:
11 exit_code = subprocess.call(['igv', '--batch', igv_script], env=os.environ.copy()) 11 exit_code = subprocess.call(['igv', '-o', preferences_file, '--batch', igv_script], env=os.environ.copy())
12 sys.exit(exit_code) 12 sys.exit(exit_code)
13 13
14 14
15 if __name__ == '__main__': 15 if __name__ == '__main__':
16 take_screenshots(sys.argv[1], sys.argv[2]) 16 take_screenshots(sys.argv[1], sys.argv[2], sys.argv[3])
17 17