Mercurial > repos > mvdbeek > fermi2
changeset 2:adf010a51dde draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit commit 47795b03c956d0f239aede8e27d2aa4e3c4c1d27
| author | mvdbeek |
|---|---|
| date | Fri, 30 Dec 2016 11:47:07 -0500 |
| parents | c6b11ead6f1f |
| children | 3ffa0a5cbd8c |
| files | fermi2.xml |
| diffstat | 1 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/fermi2.xml Fri Dec 30 10:29:32 2016 -0500 +++ b/fermi2.xml Fri Dec 30 11:47:07 2016 -0500 @@ -9,7 +9,11 @@ -s$genome_size -t\${GALAXY_SLOTS:-4} -l$readlength - -p prefix '$input1' + -p prefix <(cat + #for fastq in '$input1': + '$fastq' + #end for + ) $T $2 $E @@ -17,7 +21,7 @@ make -f prefix.mak ]]></command> <inputs> - <param type="data" name="input1" format="fastqsanger,fastqsanger.gz"/> + <param type="data" multiple="true" name="input1" format="fastqsanger,fastqsanger.gz"/> <param argument="-l" name="readlength" type="integer" label="primary read length" value="101" min="70"/> <param argument="-s" name="genome_size" type="integer" value="180000" min="1" label="approximate genome size in kilobases" help="Enter approximate genome size in kilobases. For a human genome of 3.2 gigabases enter 3200000"/> <param argument="-T" type="integer" value="61" label="use INT-mer for post-trimming/filtering" min="10"/>