# HG changeset patch
# User mvdbeek
# Date 1483116427 18000
# Node ID adf010a51dde23c58727564e310d0512ed180eb8
# Parent  c6b11ead6f1f18c3f53d3d4172652d1b266c0ffc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit commit 47795b03c956d0f239aede8e27d2aa4e3c4c1d27

diff -r c6b11ead6f1f -r adf010a51dde fermi2.xml
--- a/fermi2.xml	Fri Dec 30 10:29:32 2016 -0500
+++ b/fermi2.xml	Fri Dec 30 11:47:07 2016 -0500
@@ -9,7 +9,11 @@
         -s$genome_size
         -t\${GALAXY_SLOTS:-4}
         -l$readlength
-        -p prefix '$input1'
+        -p prefix <(cat
+        #for fastq in '$input1':
+            '$fastq'
+        #end for
+        )
         $T
         $2
         $E
@@ -17,7 +21,7 @@
         make -f prefix.mak
     ]]></command>
     <inputs>
-        <param type="data" name="input1" format="fastqsanger,fastqsanger.gz"/>
+        <param type="data" multiple="true" name="input1" format="fastqsanger,fastqsanger.gz"/>
         <param argument="-l" name="readlength" type="integer" label="primary read length" value="101" min="70"/>
         <param argument="-s" name="genome_size" type="integer" value="180000" min="1" label="approximate genome size in kilobases" help="Enter approximate genome size in kilobases. For a human genome of 3.2 gigabases enter 3200000"/>
         <param argument="-T" type="integer" value="61" label="use INT-mer for post-trimming/filtering" min="10"/>