Mercurial > repos > mvdbeek > docker_scriptrunner

diff dockerfiles/r-bioperl-python/Dockerfile @ 0:b6211faea403 draft

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
author mvdbeek
date Fri, 08 Jul 2016 15:09:10 -0400
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children e1f5be390bc3
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dockerfiles/r-bioperl-python/Dockerfile	Fri Jul 08 15:09:10 2016 -0400
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+# Script runner base image
+#
+# VERSION       0.3
+# This Dockerfile is the base system for executing scripts with the docker scriptrunner.
+
+FROM mvdbeek/scriptrunner
+
+MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
+
+RUN bash -c ". activate default && \
+    conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy"
+CMD /bin/bash -c ". activate default && exec /bin/bash"