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1 <tool id="cat_multiple" name="Concatenate multiple datasets" version="0.1">
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2 <description>tail-to-head</description>
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3 <command interpreter="python">
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4 catWrapper.py
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5 $out_file1
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6 #for $file in $input
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7 $file
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8 #end for
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9 </command>
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10 <inputs>
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11 <param name="input" type="data" label="Concatenate Dataset" multiple="True"/>
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12 </inputs>
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13 <outputs>
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14 <data name="out_file1" format_source="input" metadata_source="input"/>
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="input" value="1.bed,2.bed"/>
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19 <output name="out_file1" file="cat_wrapper_out1.bed"/>
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20 </test>
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21 </tests>
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22 <help>
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23
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24 .. class:: warningmark
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25
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26 **WARNING:** Be careful not to concatenate datasets of different kinds (e.g., sequences with intervals). This tool does not check if the datasets being concatenated are in the same format.
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27
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28 -----
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29
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30 **What it does**
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31
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32 Concatenates datasets
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33
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34 -----
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35
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36 **Example**
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37
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38 Concatenating Dataset::
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39
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40 chrX 151087187 151087355 A 0 -
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41 chrX 151572400 151572481 B 0 +
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42
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43 with Dataset1::
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44
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45 chr1 151242630 151242955 X 0 +
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46 chr1 151271715 151271999 Y 0 +
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47 chr1 151278832 151279227 Z 0 -
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48
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49 and with Dataset2::
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50
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51 chr2 100000030 200000955 P 0 +
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52 chr2 100000015 200000999 Q 0 +
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53
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54 will result in the following::
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55
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56 chrX 151087187 151087355 A 0 -
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57 chrX 151572400 151572481 B 0 +
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58 chr1 151242630 151242955 X 0 +
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59 chr1 151271715 151271999 Y 0 +
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60 chr1 151278832 151279227 Z 0 -
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61 chr2 100000030 200000955 P 0 +
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62 chr2 100000015 200000999 Q 0 +
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63
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64 -----
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65
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66 Adapted from the concatenate tool that comes with galaxy.
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67 </help>
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68 </tool>
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