Mercurial > repos > matthias > stacks2_ustacks

annotate test-data/tmp/stacks_outputs/populations.log.distribs @ 0:e7aacfd67288 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
author matthias
date Thu, 29 Nov 2018 11:36:12 -0500
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e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
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4 BEGIN batch_progress
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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5 Batch 1: analyzed 3 loci; filtered 0 loci; 3 loci seen.
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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6 Calculating F statistics...done.
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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7 END batch_progress
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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9 BEGIN samples_per_loc_prefilters
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10 # Distribution of valid samples matched to a catalog locus prior to filtering.
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11 n_samples n_loci
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13 END samples_per_loc_prefilters
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15 BEGIN missing_samples_per_loc_prefilters
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17 # Distribution of missing samples for each catalog locus prior to filtering.
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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18 # Absent samples at locus Count
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20 END missing_samples_per_loc_prefilters
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22 BEGIN snps_per_loc_prefilters
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23 # Distribution of the number of SNPs per catalog locus prior to filtering.
e7aacfd67288 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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24 n_snps n_loci
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26 END snps_per_loc_prefilters
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28 BEGIN samples_per_loc_postfilters
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29 # Distribution of valid samples matched to a catalog locus after filtering.
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30 n_samples n_loci
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32 END samples_per_loc_postfilters
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34 BEGIN missing_samples_per_loc_postfilters
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36 # Distribution of missing samples for each catalog locus after filtering.
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37 # Absent samples at locus Count
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39 END missing_samples_per_loc_postfilters
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41 BEGIN snps_per_loc_postfilters
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42 # Distribution of the number of SNPs per catalog locus (after filtering).
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43 n_snps n_loci
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45 END snps_per_loc_postfilters