Mercurial > repos > matthias > stacks2_ustacks

comparison test-data/tmp/stacks_outputs/populations.log.distribs @ 0:e7aacfd67288 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
author matthias
date Thu, 29 Nov 2018 11:36:12 -0500
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-1:000000000000 0:e7aacfd67288
1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
3
4 BEGIN batch_progress
5 Batch 1: analyzed 3 loci; filtered 0 loci; 3 loci seen.
6 Calculating F statistics...done.
7 END batch_progress
8
9 BEGIN samples_per_loc_prefilters
10 # Distribution of valid samples matched to a catalog locus prior to filtering.
11 n_samples n_loci
12 0 3
13 END samples_per_loc_prefilters
14
15 BEGIN missing_samples_per_loc_prefilters
16
17 # Distribution of missing samples for each catalog locus prior to filtering.
18 # Absent samples at locus Count
19 2 3
20 END missing_samples_per_loc_prefilters
21
22 BEGIN snps_per_loc_prefilters
23 # Distribution of the number of SNPs per catalog locus prior to filtering.
24 n_snps n_loci
25 2 3
26 END snps_per_loc_prefilters
27
28 BEGIN samples_per_loc_postfilters
29 # Distribution of valid samples matched to a catalog locus after filtering.
30 n_samples n_loci
31 0 3
32 END samples_per_loc_postfilters
33
34 BEGIN missing_samples_per_loc_postfilters
35
36 # Distribution of missing samples for each catalog locus after filtering.
37 # Absent samples at locus Count
38 2 3
39 END missing_samples_per_loc_postfilters
40
41 BEGIN snps_per_loc_postfilters
42 # Distribution of the number of SNPs per catalog locus (after filtering).
43 n_snps n_loci
44 2 3
45 END snps_per_loc_postfilters