Mercurial > repos > matthias > stacks2_cstacks

annotate test-data/refmap/populations.log.distribs @ 5:687f84474d33 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
author matthias
date Thu, 20 Jun 2019 08:12:36 -0400
parents 924e7889aa05
children
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924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
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924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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4 BEGIN batch_progress
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5 Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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6 94 genomic sites, of which 0 were covered by multiple loci (0.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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7 Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
matthias
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8 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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9 Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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10 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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11 Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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12 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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13 Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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14 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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15 Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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16 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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17 Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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18 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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19 END batch_progress
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21 BEGIN samples_per_loc_prefilters
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22 # Distribution of valid samples matched to a catalog locus prior to filtering.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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23 n_samples n_loci
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25 END samples_per_loc_prefilters
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27 BEGIN missing_samples_per_loc_prefilters
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28 # Distribution of missing samples for each catalog locus prior to filtering.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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29 # Absent samples at locus Count
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31 END missing_samples_per_loc_prefilters
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33 BEGIN snps_per_loc_prefilters
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34 # Distribution of the number of SNPs per catalog locus prior to filtering.
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35 n_snps n_loci
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36 0 10
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37 2 3
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38 END snps_per_loc_prefilters
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40 BEGIN samples_per_loc_postfilters
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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41 # Distribution of valid samples matched to a catalog locus after filtering.
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42 n_samples n_loci
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44 END samples_per_loc_postfilters
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46 BEGIN missing_samples_per_loc_postfilters
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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47 # Distribution of missing samples for each catalog locus after filtering.
924e7889aa05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
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48 # Absent samples at locus Count
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49 0 13
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50 END missing_samples_per_loc_postfilters
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52 BEGIN snps_per_loc_postfilters
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53 # Distribution of the number of SNPs per catalog locus (after filtering).
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54 n_snps n_loci
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55 0 10
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57 END snps_per_loc_postfilters