Mercurial > repos > matthias > data_manager_dada2
diff data_manager_conf.xml @ 8:da93e6a3fe23 draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
| author | matthias |
|---|---|
| date | Wed, 19 Jun 2019 08:15:26 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Wed Jun 19 08:15:26 2019 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/dada2_fetcher.xml" id="dada2_fetcher"> + <data_table name="dada2_taxonomy"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file" relativize_symlinks="True"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + <column name="taxlevels" /> + </output> + </data_table> + <data_table name="dada2_species"> + <output> + <column name="value" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file" relativize_symlinks="True"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>