Mercurial > repos > matthias > dada2_plotqualityprofile

comparison dada2_plotQualityProfile.xml @ 11:36224cf72a7b draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit b59ed2476188176bb5b2973f59899b7d733e7641-dirty
author matthias
date Thu, 29 Aug 2019 09:02:34 -0400
parents d908015e5889
children
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10:279014cdd101 11:36224cf72a7b
1 <tool id="dada2_plotQualityProfile" name="dada2: plotQualityProfile" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@"> 1 <tool id="dada2_plotQualityProfile" name="dada2: plotQualityProfile" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09">
2 <description>plot a visual summary of the quality scores</description> 2 <description>plot a visual summary of the quality scores</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio"/>
7 <expand macro="version_command"/> 8 <expand macro="version_command"/>
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 ##name files by linking 10 ##name files by linking
10 #import re 11 #import re
11 mkdir forward && 12 mkdir forward &&
173 Details 174 Details
174 ....... 175 .......
175 176
176 The distribution of quality scores at each position is shown as a grey-scale heat map, with dark colors corresponding to higher frequency. The plotted lines show positional summary statistics: green is the mean, orange is the median, and the dashed orange lines are the 25th and 75th quantiles. If the sequences vary in length, a red line will be plotted showing the percentage of reads that extend 177 The distribution of quality scores at each position is shown as a grey-scale heat map, with dark colors corresponding to higher frequency. The plotted lines show positional summary statistics: green is the mean, orange is the median, and the dashed orange lines are the 25th and 75th quantiles. If the sequences vary in length, a red line will be plotted showing the percentage of reads that extend
177 to at least that position. 178 to at least that position.
179
180 @HELP_OVERVIEW@
178 ]]></help> 181 ]]></help>
179 <expand macro="citations"/> 182 <expand macro="citations"/>
180 </tool> 183 </tool>