Mercurial > repos > kls286 > chap_test_20230328

changeset 18:f7133218d7c3 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit ce2473c98dd6335cc95f8b76db3933927f2a5c11
author kls286
date Tue, 04 Apr 2023 16:57:20 +0000
parents 7e483c79c86f
children 4b553f7fb7fb
files saxswaxs-config/pipeline.yaml
diffstat 1 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/saxswaxs-config/pipeline.yaml	Tue Apr 04 16:37:27 2023 +0000
+++ b/saxswaxs-config/pipeline.yaml	Tue Apr 04 16:57:20 2023 +0000
@@ -1,25 +1,25 @@
 pipeline:
 
   # Download example data
-  - reader.URLReader:
+  - common.URLReader:
       url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main
       headers:
         PRIVATE-TOKEN: glpat-sH-sniHbynCxUDJBpv5V # your token here
-  - processor.URLResponseProcessor
-  - writer.ExtractArchiveWriter:
+  - common.URLResponseProcessor
+  - common.ExtractArchiveWriter:
       filename: .
 
   # Collect map data
-  - reader.YAMLReader:
+  - common.YAMLReader:
       filename: map.yaml
       schema: MapConfig
-  - processor.MapProcessor
-  - writer.NexusWriter:
+  - common.MapProcessor
+  - common.NexusWriter:
       filename: map_specdata.nxs
       force_overwrite: true
 
   # Integrate map detetcor data
-  - reader.MultipleReader:
+  - common.MultipleReader:
       readers:
         - YAMLReader:
             filename: map.yaml
@@ -27,7 +27,7 @@
         - YAMLReader:
             filename: integration.yaml
             schema: IntegrationConfig
-  - processor.IntegrateMapProcessor
-  - writer.NexusWriter:
+  - common.IntegrateMapProcessor
+  - common.NexusWriter:
       filename: map_reduceddata.nxs
       force_overwrite: true