Mercurial > repos > kls286 > chap_test_20230328
changeset 10:7cc954f15149 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 2d65c72740d0439b8385378a890b3763d717f152-dirty
| author | kls286 |
|---|---|
| date | Wed, 29 Mar 2023 17:53:07 +0000 |
| parents | cc597d6571bc |
| children | 92db332d6de5 |
| files | CHAP/__main__.py chap.xml scripts/CHAP setup.py |
| diffstat | 4 files changed, 4 insertions(+), 11 deletions(-) [+] |
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--- a/CHAP/__main__.py Wed Mar 29 17:40:12 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -from CHAP.runner import main - -if __name__ == '__main__': - main()
--- a/chap.xml Wed Mar 29 17:40:12 2023 +0000 +++ b/chap.xml Wed Mar 29 17:53:07 2023 +0000 @@ -1,9 +1,9 @@ <tool id="chap" name="CHESS Analysis Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> <requirements> - <requirement type="package" version="0.0.2">chessanalysispipeline</requirement> + <requirement type="package" version="0.0.2">ChessAnalysisPipeline</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - cp '$input' data.csv && CHAP --config '$config' + which python && cp '$input' data.csv && CHAP --config '$config' ]]></command> <inputs> <param type="data" name="config" format="yaml" />
--- a/scripts/CHAP Wed Mar 29 17:40:12 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -#!/bin/bash - -python -m CHAP "$@"
--- a/setup.py Wed Mar 29 17:40:12 2023 +0000 +++ b/setup.py Wed Mar 29 17:53:07 2023 +0000 @@ -32,7 +32,7 @@ setuptools.setup( name="ChessAnalysisPipeline", - version="0.0.1", + version="0.0.2", author="Keara Soloway, Rolf Verberg, Valentin Kuznetsov", author_email="", description="CHESS analysis pipeline framework", @@ -42,7 +42,7 @@ packages=['CHAP', 'MLaaS'], package_dir={'CHAP': 'CHAP', 'MLaaS': 'MLaaS'}, package_data={'examples': data_files}, - scripts=['scripts/CHAP'], + entry_points={'console_scripts': ['CHAP = CHAP.runner:main']}, classifiers=[ "Programming Language :: Python :: 3", "License :: OSI Approved :: MIT License",