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view examples/sin2psi/pipeline.yaml @ 10:7cc954f15149 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 2d65c72740d0439b8385378a890b3763d717f152-dirty
author kls286
date Wed, 29 Mar 2023 17:53:07 +0000
parents cbbe42422d56
children
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pipeline:

  # Collect map data
  - reader.YAMLReader:
      filename: examples/sin2psi/map.yaml
      schema: MapConfig
  - processor.MapProcessor
  - writer.NexusWriter:
      filename: examples/sin2psi/map.nxs
      force_overwrite: true

  # Integrate map detector data
  - reader.MultipleReader:
      readers:
        - YAMLReader:
            filename: examples/sin2psi/map.yaml
            schema: MapConfig
        - YAMLReader:
            filename: examples/sin2psi/integration.yaml
            schema: IntegrationConfig
  - processor.IntegrateMapProcessor
  - writer.NexusWriter:
      filename: examples/sin2psi/integrated_detector_data.nxs
      force_overwrite: true

  # Compute sample strain map
  - reader.MultipleReader:
      readers:
        - NexusReader:
            filename: examples/sin2psi/integrated_detector_data.nxs
        - YAMLReader:
            filename: examples/sin2psi/strain_analysis_config.yaml
            schema: StrainAnalysisConfig
  - processor.StrainAnalysisProcessor
  - writer.YAMLWriter:
      filename: examples/sin2psi/sample_strain_data.yaml
      force_overwrite: true