Mercurial > repos > kls286 > chap_test_20230328
comparison build/lib/CHAP/models/workflow.py @ 0:cbbe42422d56 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
| author | kls286 |
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| date | Tue, 28 Mar 2023 15:07:30 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:cbbe42422d56 |
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| 1 #!/usr/bin/env python | |
| 2 #-*- coding: utf-8 -*- | |
| 3 #pylint: disable= | |
| 4 """ | |
| 5 File : workflow.py | |
| 6 Author : Valentin Kuznetsov <vkuznet AT gmail dot com> | |
| 7 Description: Workflow module | |
| 8 """ | |
| 9 | |
| 10 # system modules | |
| 11 from basemodel import BaseModel | |
| 12 | |
| 13 | |
| 14 class Workflow(BaseModel): | |
| 15 """ | |
| 16 Workflow docstring | |
| 17 """ | |
| 18 def __init__(self, filename=None, **kwds): | |
| 19 super().__init__(filename, **kwds) | |
| 20 self.map['workflow'] = __name__ | |
| 21 print('create Workflow calls: ', end='') | |
| 22 | |
| 23 | |
| 24 class EDDWorkflow(Workflow): | |
| 25 """ | |
| 26 EDDWorkflow | |
| 27 """ | |
| 28 def __init__(self, filename=None, **kwds): | |
| 29 super().__init__(filename, **kwds) | |
| 30 self.map['workflow'] = 'edd' | |
| 31 print('create EDDWorkflow') | |
| 32 | |
| 33 class SAXWWorkflow(Workflow): | |
| 34 """ | |
| 35 SAXWWorkflow | |
| 36 """ | |
| 37 def __init__(self, filename=None, **kwds): | |
| 38 super().__init__(filename, **kwds) | |
| 39 self.map['workflow'] = 'saxw' | |
| 40 print('create SAXWWorkflow') | |
| 41 | |
| 42 if __name__ == '__main__': | |
| 43 print('--- create EDDWorkflow from config') | |
| 44 wflow = EDDWorkflow() | |
| 45 print('map', wflow.map) | |
| 46 print('--- create SAXWWorkflow from file.txt') | |
| 47 wflow = SAXWWorkflow('file.txt') | |
| 48 print('map', wflow.map) |