Mercurial > repos > kls286 > chap_test_20230328
comparison pipeline.yaml @ 19:4b553f7fb7fb draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
| author | kls286 |
|---|---|
| date | Tue, 11 Apr 2023 11:10:48 +0000 |
| parents | |
| children | 2c6483be513d |
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| 18:f7133218d7c3 | 19:4b553f7fb7fb |
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| 1 pipeline: | |
| 2 | |
| 3 # Download example data | |
| 4 - common.URLReader: | |
| 5 url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main | |
| 6 headers: | |
| 7 PRIVATE-TOKEN: # your token here | |
| 8 - common.URLResponseProcessor | |
| 9 - common.ExtractArchiveWriter: | |
| 10 filename: . | |
| 11 | |
| 12 # Collect map data | |
| 13 - common.YAMLReader: | |
| 14 filename: map.yaml | |
| 15 schema: MapConfig | |
| 16 - common.MapProcessor | |
| 17 - common.NexusWriter: | |
| 18 filename: map_specdata.nxs | |
| 19 force_overwrite: true | |
| 20 | |
| 21 # Integrate map detetcor data | |
| 22 - common.MultipleReader: | |
| 23 readers: | |
| 24 - YAMLReader: | |
| 25 filename: map.yaml | |
| 26 schema: MapConfig | |
| 27 - YAMLReader: | |
| 28 filename: integration.yaml | |
| 29 schema: IntegrationConfig | |
| 30 - common.IntegrateMapProcessor | |
| 31 - common.NexusWriter: | |
| 32 filename: map_reduceddata.nxs | |
| 33 force_overwrite: true |