Mercurial > repos > kls286 > chap_test_20230328

diff pipeline.yaml @ 19:4b553f7fb7fb draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
author kls286
date Tue, 11 Apr 2023 11:10:48 +0000
parents
children 2c6483be513d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pipeline.yaml	Tue Apr 11 11:10:48 2023 +0000
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+pipeline:
+
+  # Download example data
+  - common.URLReader:
+      url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main
+      headers:
+        PRIVATE-TOKEN: # your token here
+  - common.URLResponseProcessor
+  - common.ExtractArchiveWriter:
+      filename: .
+
+  # Collect map data
+  - common.YAMLReader:
+      filename: map.yaml
+      schema: MapConfig
+  - common.MapProcessor
+  - common.NexusWriter:
+      filename: map_specdata.nxs
+      force_overwrite: true
+
+  # Integrate map detetcor data
+  - common.MultipleReader:
+      readers:
+        - YAMLReader:
+            filename: map.yaml
+            schema: MapConfig
+        - YAMLReader:
+            filename: integration.yaml
+            schema: IntegrationConfig
+  - common.IntegrateMapProcessor
+  - common.NexusWriter:
+      filename: map_reduceddata.nxs
+      force_overwrite: true