Mercurial > repos > kls286 > chap_test_20230328

annotate pipeline.yaml @ 21:2c6483be513d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9-dirty
author kls286
date Tue, 11 Apr 2023 11:20:26 +0000
parents 4b553f7fb7fb
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
19
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
1 pipeline:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
2
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
3 # Download example data
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
4 - common.URLReader:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
5 url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
6 headers:
21
2c6483be513d planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9-dirty
kls286
parents: 19
diff changeset
7 PRIVATE-TOKEN: glpat-sH-sniHbynCxUDJBpv5V # your token here
19
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
8 - common.URLResponseProcessor
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
9 - common.ExtractArchiveWriter:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
10 filename: .
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
11
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
12 # Collect map data
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
13 - common.YAMLReader:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
14 filename: map.yaml
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
15 schema: MapConfig
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
16 - common.MapProcessor
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
17 - common.NexusWriter:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
18 filename: map_specdata.nxs
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
19 force_overwrite: true
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
20
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
21 # Integrate map detetcor data
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
22 - common.MultipleReader:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
23 readers:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
24 - YAMLReader:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
25 filename: map.yaml
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
26 schema: MapConfig
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
27 - YAMLReader:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
28 filename: integration.yaml
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
29 schema: IntegrationConfig
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
30 - common.IntegrateMapProcessor
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
31 - common.NexusWriter:
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
32 filename: map_reduceddata.nxs
4b553f7fb7fb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 2e1e853d16782d778b15f82fb5760874382b36e9
kls286
parents:
diff changeset
33 force_overwrite: true