Mercurial > repos > jowong > spotyping

changeset 5:f1b3a263dd3a draft

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planemo upload
author jowong
date Mon, 05 Nov 2018 11:10:46 -0500
parents d849a2f860e2
children 20c20bcdec36
files spotyping.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/spotyping.xml	Mon Nov 05 10:21:31 2018 -0500
+++ b/spotyping.xml	Mon Nov 05 11:10:46 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="spotyping" name="Spoligotype Prediction" version="0.1.3">
+<tool id="spotyping" name="Spoligotype Prediction" version="0.1.4">
     <requirements>
         <requirement type="package" version="2.1">spotyping</requirement>
     </requirements>
@@ -10,6 +10,7 @@
         #if str( $data_input.data_selector ) == "single"       
             $data_input.input2.element_identifier
         #end if
+        && cp SITVIT_ONLINE.*.xls spotyping.xls
         ]]>
     </command>
     <inputs>
@@ -29,7 +30,7 @@
     <outputs>
         <data name="output1" label="spoligotyping results" format="txt" from_work_dir="SpoTyping"/>
         <data name="output2" label="spoligotyping log" format="txt" from_work_dir="SpoTyping.log"/>
-        <data name="output3" label="query" format="txt" from_work_dir="*.xls"/>
+        <data name="output3" label="query" format="excel.xls" from_work_dir="spotyping.xls"/>
     </outputs>
     <help><![CDATA[
         Usage: python SpoTyping.py [options] FASTQ_1/FASTA FASTQ_2(optional)