# HG changeset patch
# User jowong
# Date 1541434246 18000
# Node ID f1b3a263dd3a37d4ee8a418de2f2d997c27ece23
# Parent  d849a2f860e2c3cfacce4bb28d32829e678450ff
planemo upload

diff -r d849a2f860e2 -r f1b3a263dd3a spotyping.xml
--- a/spotyping.xml	Mon Nov 05 10:21:31 2018 -0500
+++ b/spotyping.xml	Mon Nov 05 11:10:46 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="spotyping" name="Spoligotype Prediction" version="0.1.3">
+<tool id="spotyping" name="Spoligotype Prediction" version="0.1.4">
     <requirements>
         <requirement type="package" version="2.1">spotyping</requirement>
     </requirements>
@@ -10,6 +10,7 @@
         #if str( $data_input.data_selector ) == "single"       
             $data_input.input2.element_identifier
         #end if
+        && cp SITVIT_ONLINE.*.xls spotyping.xls
         ]]>
     </command>
     <inputs>
@@ -29,7 +30,7 @@
     <outputs>
         <data name="output1" label="spoligotyping results" format="txt" from_work_dir="SpoTyping"/>
         <data name="output2" label="spoligotyping log" format="txt" from_work_dir="SpoTyping.log"/>
-        <data name="output3" label="query" format="txt" from_work_dir="*.xls"/>
+        <data name="output3" label="query" format="excel.xls" from_work_dir="spotyping.xls"/>
     </outputs>
     <help><![CDATA[
         Usage: python SpoTyping.py [options] FASTQ_1/FASTA FASTQ_2(optional)