Mercurial > repos > jowong > prince_galaxy
diff filler.py @ 0:88748989a22a draft default tip
planemo upload
author | jowong |
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date | Tue, 13 Nov 2018 11:41:37 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/filler.py Tue Nov 13 11:41:37 2018 -0500 @@ -0,0 +1,20 @@ +#!/usr/bin/env python + +import sys +import argparse as ap + +parser = ap.ArgumentParser(prog='filler', conflict_handler='resolve', + description="produce filler collection to deal with galaxy handling") + +input = parser.add_argument_group('Input', '') +input.add_argument('-i', '--input', nargs=1, required=True, help="Paths to (forward) reads") +input.add_argument('-o', '--output', nargs=1, required=True, help="output") + +if len(sys.argv) == 0: + parser.print_usage() + sys.exit(1) + +args = parser.parse_args() +output = open(args.output[0], 'w') +output.write(args.input[0]) +output.write("\n")