Mercurial > repos > jowong > prince_galaxy
annotate prince_postprocess.xml @ 0:88748989a22a draft default tip
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| author | jowong |
|---|---|
| date | Tue, 13 Nov 2018 11:41:37 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="prince_postprocess" name="Prince Postprocess" version="1.0.0"> |
| 2 <description>Postprocess PRINCE galaxy output</description> | |
| 3 <command interpreter="python"><![CDATA[ | |
| 4 prince_postprocess.py -i $prince_output -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for# | |
| 5 ]]></command> | |
| 6 <inputs> | |
| 7 <param name="paths" type="data" format="data" label="Collection of files" help="" optional="False" multiple="True"/> | |
| 8 <param name="prince_output" format="txt" type="data" label="PRINCE output" /> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data name="output" format="txt" from_work_dir="prince_postprocess_output.txt"/> | |
| 12 </outputs> | |
| 13 <help> | |
| 14 This tool processes the PRINCE galaxy output such that it is in line with the command line | |
| 15 </help> | |
| 16 <citations> | |
| 17 </citations> | |
| 18 </tool> |