Mercurial > repos > jowong > kwip

changeset 11:a1dbbc803160 draft

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planemo upload
author jowong
date Thu, 22 Nov 2018 08:32:49 -0500
parents 1c03467f2267
children 9ab6536c9c14
files kwip.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/kwip.xml	Thu Nov 22 08:25:09 2018 -0500
+++ b/kwip.xml	Thu Nov 22 08:32:49 2018 -0500
@@ -1,10 +1,16 @@
-<tool id="kwip" name="kwip" version="1.1.9">
+<tool id="kwip" name="kwip" version="1.2.0">
     <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description>
     <requirements>
         <requirement type="package" version="0.2.0">kwip</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-	kwip -h
+        #for $input in $inputs# cp $input $(basename "$input.element_identifier" .fastq).ct.gz && #end for# 
+        kwip 
+        -t $advanced.thread 
+        -k kwip.kernel 
+        -d kwip.dist 
+        $advanced.unweighted
+        #for $input in $inputs# $(basename "$input.element_identifier" .fastq).ct.gz #end for#
     ]]></command>
     <inputs>
         <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>