# HG changeset patch
# User jowong
# Date 1542893569 18000
# Node ID a1dbbc803160d7f29d013048ddb29057525f7a64
# Parent  1c03467f2267b404095b441155985cc51c788b5a
planemo upload

diff -r 1c03467f2267 -r a1dbbc803160 kwip.xml
--- a/kwip.xml	Thu Nov 22 08:25:09 2018 -0500
+++ b/kwip.xml	Thu Nov 22 08:32:49 2018 -0500
@@ -1,10 +1,16 @@
-<tool id="kwip" name="kwip" version="1.1.9">
+<tool id="kwip" name="kwip" version="1.2.0">
     <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description>
     <requirements>
         <requirement type="package" version="0.2.0">kwip</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-	kwip -h
+        #for $input in $inputs# cp $input $(basename "$input.element_identifier" .fastq).ct.gz && #end for# 
+        kwip 
+        -t $advanced.thread 
+        -k kwip.kernel 
+        -d kwip.dist 
+        $advanced.unweighted
+        #for $input in $inputs# $(basename "$input.element_identifier" .fastq).ct.gz #end for#
     ]]></command>
     <inputs>
         <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/>