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1 <?xml version="1.0"?>
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2 <tool id="sqlite_to_tabular" name="SQLite to tabular" version="0.0.1">
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3 <description>for SQL query</description>
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4 <stdio>
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5 <exit_code range="1:" level="fatal" description="Error" />
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6 </stdio>
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7 <command interpreter="python">
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8 sqlite_to_tabular.py
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9 --sqlitedb="$sqlitedb"
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10 --query='$sqlquery'
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11 $no_header
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12 --output="$query_results"
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13 </command>
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14 <inputs>
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15 <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
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16 <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
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17 <validator type="regex">^(?im)\s*SELECT\s.*\sFROM\s.*$</validator>
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18 <sanitizer sanitize="False"/>
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19 </param>
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20 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/>
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21 </inputs>
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22 <outputs>
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23 <data name="query_results" format="tabular" />
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24 </outputs>
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25 <tests>
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26 <!--
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27 -->
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28 <test>
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29 <param name="sqlitedb" ftype="sqlite" value="testdb.sqlite" />
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30 <param name="sqlquery" value="SELECT first_name, last_name, age FROM contacts WHERE first_name = 'Sam'" />
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31 <output name="query_results">
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32 <assert_contents>
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33 <has_text text="Smith" />
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34 <not_has_text text="Doe" />
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35 </assert_contents>
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36 </output>
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37 </test>
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38 </tests>
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39 <help>
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40 Outputs the results of a query on a SQLite Database as a tabular file.
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41 </help>
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42 </tool>
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