Mercurial > repos > jjohnson > snpeff_with_dep
annotate tool_dependencies.xml @ 11:e9e4ff80e72b
Release version 3.0
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 18 Sep 2012 09:28:08 -0500 |
| parents | 9cd24981dbd2 |
| children | 57c46f7fe70b |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 | 4 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable> |
| 0 | 5 </set_environment> |
| 11 | 6 <package name="snpEff" version="3.0"> |
| 0 | 7 <install version="1.0"> |
| 8 <actions> | |
| 11 | 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_0_core.zip</action> |
| 4 | 10 <action type="move_file"> |
| 11 | 11 <source>snpEff_v3_0_core.zip</source> |
| 12 <destination>$INSTALL_DIR</destination> | |
|
9
38b3a6b97bd1
Add src dir snpEff_3_0 to move_file in tool_dependencies.xml
Jim Johnson <jj@umn.edu>
parents:
8
diff
changeset
|
13 </action> |
| 11 | 14 <action type="shell_command">unzip snpEff_v3_0_core.zip</action> |
| 15 <action type="shell_command">ln -s snpEff_3_0 bin</action> | |
| 4 | 16 <action type="set_environment"> |
| 6 | 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 4 | 18 </action> |
| 0 | 19 </actions> |
| 20 </install> | |
| 21 <readme> | |
| 22 </readme> | |
| 23 </package> | |
| 24 | |
| 25 </tool_dependency> | |
| 26 |