Mercurial > repos > jjohnson > snpeff
view snpEff_databases.xml @ 16:3790e16a0be0
Add datatype: snpeffdbv4
author | Jim Johnson <jj@umn.edu> |
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date | Thu, 23 Oct 2014 05:09:26 -0500 |
parents | |
children | 36f3c82323e6 |
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<tool id="snpEff_databases" name="SnpEff Available Databases" version="4.0.0"> <description></description> <expand macro="requirements" /> <macros> <import>snpEff_macros.xml</import> </macros> <command> java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs </command> <inputs> </inputs> <outputs> <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" /> </outputs> <expand macro="stdio" /> <help> @EXTERNAL_DOCUMENTATION@ @CITATION_SECTION@ </help> </tool>