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comparison snpEff_databases.xml @ 16:3790e16a0be0

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Add datatype: snpeffdbv4
author Jim Johnson <jj@umn.edu>
date Thu, 23 Oct 2014 05:09:26 -0500
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15:fac49d7ea7d4 16:3790e16a0be0
1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="4.0.0">
2 <description></description>
3 <expand macro="requirements" />
4 <macros>
5 <import>snpEff_macros.xml</import>
6 </macros>
7 <command>
8 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs
9 </command>
10 <inputs>
11 </inputs>
12 <outputs>
13 <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" />
14 </outputs>
15 <expand macro="stdio" />
16 <help>
17
18 @EXTERNAL_DOCUMENTATION@
19
20 @CITATION_SECTION@
21
22 </help>
23 </tool>
24