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diff tool_data_table_conf.xml.sample @ 5:8952990fcab9

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Update to snpEff version 3.4 and add data managers to download snpEff genome reference databases
author Jim Johnson <jj@umn.edu>
date Wed, 27 Nov 2013 09:11:32 -0600
parents e1d9f6a0ad53
children 4be8e0068bc3
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line diff
--- a/tool_data_table_conf.xml.sample	Mon Oct 07 10:59:44 2013 -0500
+++ b/tool_data_table_conf.xml.sample	Wed Nov 27 09:11:32 2013 -0600
@@ -4,12 +4,16 @@
         <file path="tool-data/snpeff_databases.loc" />
     </table>
     <table name="snpeff_genomedb" comment_char="#">
-        <columns>value, name</columns>
+        <columns>value, name, path</columns>
         <file path="tool-data/snpeff_genomedb.loc" />
     </table>
     <table name="snpeff_regulationdb" comment_char="#">
-        <columns>value, name</columns>
+        <columns>genome, value, name</columns>
         <file path="tool-data/snpeff_regulationdb.loc" />
     </table>
+    <table name="snpeff_annotations" comment_char="#">
+        <columns>genome, value, name</columns>
+        <file path="tool-data/snpeff_annotations.loc" />
+    </table>
 </tables>